18 September 2014

Sailfish and Reproducible research

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# Thursday notes

### ApTranscriptome

Sailfish - expression values consistent among all 10 replicates.

Difference with previous results due to new version of software!

Realized this when I had to update read.sailfish.quant function to allow for new column, “EstimatedNumKmers”.

Three days chasing down bug…back to where I was…but inadvertent positive effect is that I reproduced and validated previous results! Reproducible research pays off!