14 February 2014
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Guide to deploying shiny on Amazon EC2
Set up alpha account for shinyapps and deployed my ApRxN app!
Followed this guide
Cool R script to query a website and plot Olymic medal data.
Regarding Don’s suggestion to give drop-down list of GO IDs rather than a search box, may be able to use this function that describes relations among GO terms to extract the correct transcripts for a given GO term.
Fu, G.K., Xu, W., Wilhelmy, J., Mindrinos, M.N., Davis, R.W., Xiao, W. & Fodor, S.P.A. (2014). Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations. Proceedings of the National Academy of Sciences, 111, 1891–1896.
Li, Y., Cheng, R., Spokas, K.A., Palmer, A.A. & Borevitz, J.O. (2014). Genetic Variation for Life History Sensitivity to Seasonal Warming in Arabidopsis thaliana. Genetics, 196, 569–577.
shinyapps error message:
Working on transcriptome manuscript.
Changed shinyapp to “medium” size (up to 500MB RAM) and it now seems to run with problem.
Working an analysis and manuscript.
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