25 April 2014

make, jekyll, and mosaicplot

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# Friday notes

• Guide to using make

For Jekyll citations, I’ve been using knitcitations because it’s the hammer I have. A more Jekyll-native tools is Jekyll-scholar. The problem is that this requires maintaining a bibtex or other reference file. See this issue for discussion of Turning URLs into links

### ApTranscriptome

Changed Table 1 to 4 x 4 matrix showing overlap between colonies of expression type for responsive transcripts. Visualized using mosaicplot.

Working on determing Ton for each transcript - the temperature at which it is turned on.