11 April 2014

R and EC2

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Notes

2014-04-07

computing

Guide to setting up RStudio on Amazon EC2

Cool R web-scraping example on dissertation page length

Rstats apply help

ApTranscriptome

Writing…

Reading

Otwinowski, J. & Plotkin, J.B. (2014). Inferring fitness landscapes by regression produces biased estimates of epistasis. arXiv:1404.1061 [q-bio]. Retrieved April 7, 2014, from http://arxiv.org/abs/1404.1061

Volis, S., Ormanbekova, D., Yermekbayev, K., Song, M. & Shulgina, I. (2014). Introduction beyond a species range: a relationship between population origin, adaptive potential and plant performance. Heredity.

2014-04-08

Lab safety officer meeting

ApTranscriptome

Gene set enrichment analysis for

1. Transcripts with same expression type in each colony (e.g. “High” in both Ar and A22)
2. Transcripts with each expression type only for that colony (e.g. “High” in Ar but not in A22) - the set difference

Writing…

2014-04-09

Writing and analysis

Meeting with Jeanne Harris

2014-04-10

Writing and analysis

Lab meeting

Discussion of job application materials

2014-04-11

Writing…

Subscripts in RMarkdown

Sent manuscript draft out!